Example 1: Dataset with DICOM Data
The Data schema
The Data Schema can be uploaded as a CSV to the Rhino Web UI or added directly to the Rhino Web UI through the built-in Data Schema editor. For this example, we will create this Dataset within the UI and name it Stroke Schema.
| Field Name | StudyInstanceUID | SpO2 | Stroke Present? | Number of Points | Gender |
| Identifier | (5000, 0010) | ||||
| Description | |||||
| Role | Input | Input | Output | Metadata | Metadata |
| Type | DicomStudyUID | Percent | Boolean | DicomTag | Enum |
| Type Parameters | {"choices": ["m", "f", "o"]} | ||||
| May Contain PHI? | False | False | False | False | False |
The Dataset's Tabular Data
The tabular data CSV file is prepared within the institutional firewall from data in clinical systems and then copied via SFTP to the Rhino Client.
| StudyInstanceUID | Gender | SpO2 | Stroke Present? |
| 1.3.12.2.1107.5.4.3.11540117440512.19970422.140030.45 | m | 0.97 | True |
| 1.3.12.2.1107.5.4.3.123456789012345.19950922.121803.6 | m | 0.98 | False |
| 1.3.12.2.1107.5.4.3.4975316777216.19951114.94101.16 | f | 0.95 | True |
| ... | ... | ... | ... |
For this example: Let’s say this tabular CSV file was copied via SFTP to the following location on your Rhino Client: /rhino_data/uploads/stroke/dataset1.csv
The Dataset's DICOM Data
All DICOM files associated with the studies in the tabular data file are queried from the PACS, de-identified, and then copied via SFTP to the Rhino Client.
The Rhino Client doesn’t require or expect any specific file structure, so all .dcm files can be put under the same directory, under sub-directories (e.g., for each study or series), or a mix of the two.
For this example, let's say we place our DICOM data in the following locations on our Rhino Client
/rhino_data/uploads/dicom_data/1.3.12.2.1107.5.4.3.11540117440512.19970422.140030.46.dcm/rhino_data/uploads/dicom_data/another.dcm/rhino_data/uploads/dicom_data/1.dcm/rhino_data/uploads/dicom_data/study1/1.dcm/rhino_data/uploads/dicom_data/study1/2.dcm/rhino_data/uploads/dicom_data/study2/1.dcm
The Dataset's File Data
No file data exists in this Dataset
Importing the Dataset into the FCP
- Name: Example 1 Dataset
- Description: Example 1 Dataset
- Data Schema: Stroke Schema v0
-
Tabular Data File Path:
/rhino_data/uploads/stroke/dataset1.csv -
DICOM Data Path:
- Import Method: Filesystem
-
Path:
/rhino_data/uploads/dicom_data
-
File Data Path:
/rhino_data/(Default Value: Do not change) - Is Data De-identified?: Yes